CESSHIV-1 database

General information on HIV-1 isolate

# 871

Accession number	AB253693
Name	pJPDR1236AEC31
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	1236

AB253693 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaa--ttttgac tagcggtggc tagaaggaga gaa

Isolates with identical sequences of region:

AB253423(#906) AB253681(#859) AB253682(#860) AB253683(#861) AB253684(#862) AB253685(#863) AB253686(#864) AB253687(#865) AB253688(#866) AB253689(#867) AB253690(#868) AB253691(#869) AB253692(#870) AB253694(#872) AB253695(#873) AB253696(#874) AB253697(#875) AB253698(#876) AB253699(#877) AB253700(#878) AB253701(#879) AB253702(#880) AB253703(#881) AB253704(#882) AB253705(#883) AB253706(#884) AB253707(#885) AB253708(#886) AB253709(#887) AB253710(#888) AB253712(#890) AB253713(#891) AB253714(#892) AB253715(#893) AB253716(#894)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy