CESSHIV-1 database

General information on HIV-1 isolate

# 2760

Accession number	AB485669
Name	I_2478B
Subtype	Group O
Country	USA
Submitted to NCBI	2009
Patient	I_2478B

AB485669 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tagcggagtg cacctgctaa gaggcgag-----ag gaactcacag gg-gtgagtaa atttg-ctggc ggtggccaga cctaggggaa gggcgaagtc tctaggggag gaa

Isolates with identical sequences of region:

AB485668(#2759) AY169805(#300) AY169807(#301)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy