CESSHIV-1 database

General information on HIV-1 isolate

# 2027

Accession number	FJ496079
Name	04013226_2_flH5
Subtype	B
Country	USA
Sampling year	2002
Patient	04013226

FJ496079 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaacg cgcgcggcaa gaggcgaggg gtacggcgac tggtgagtac gccaaaattt ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

FJ496072(#2020) FJ496073(#2021) FJ496074(#2022) FJ496075(#2023) FJ496076(#2024) FJ496077(#2025) FJ496078(#2026) FJ496080(#2028)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy