CESSHIV-1 database

General information on HIV-1 isolate

# 801

Accession number	AB253678
Name	pJPDR3730AE22
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	NH2000-001

AB253678 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttaa agtggtgtgt gcccatttgt gtcaggactc tggtaactag agatccctca gaccactcta gactgagta-a aaatctctag ca

Isolates with identical sequences of region:

AB253635(#758) AB253636(#759) AB253637(#760) AB253638(#761) AB253639(#762) AB253641(#764) AB253642(#765) AB253644(#767) AB253645(#768) AB253646(#769) AB253647(#770) AB253648(#771) AB253649(#772) AB253650(#773) AB253651(#774) AB253652(#775) AB253653(#776) AB253654(#777) AB253655(#778) AB253656(#779) AB253657(#780) AB253658(#781) AB253659(#782) AB253660(#783) AB253662(#785) AB253663(#786) AB253664(#787) AB253665(#788) AB253666(#789) AB253667(#790) AB253668(#791) AB253669(#792) AB253670(#793) AB253671(#794) AB253672(#795) AB253673(#796) AB253674(#797) AB253675(#798) AB253676(#799) AB253677(#800) AB253679(#802) AB253680(#803)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy