CESSHIV-1 database

General information on HIV-1 isolate

# 48

Accession number	AF042106
Name	PC18RO1
Subtype	B
Country	Australia
Sampling year	1993
Patient	C18

AF042106 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtatctag agatccctca gaccctttta gtccgtgtgg aaaatctcta gca

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy