CESSHIV-1 database

General information on HIV-1 isolate

# 1366

Accession number	AB191676
Name	00ZM-Mpk2
Subtype	C
Country	Zambia
Sampling year	2000

AB191676 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacc-ttt tggttagtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtag aaccagagga gatctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy