CESSHIV-1 database

General information on HIV-1 isolate

# 1494

Accession number	AF254706
Name	NT42_3
Subtype	C
Country	Tanzania
Sampling year	1996
Patient	42

AF254706 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacccgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

DQ369985(#651) EU293447(#1207)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy