General information on HIV-1 isolate
# 1346
| Accession number |
AF413958 |
| Name | 98UA0116 clone 1-ltr |
| Subtype | A1 |
| Country | Ukraine |
| Sampling year |
2000 |
| Patient | UA0116 |
AF413958 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .
The region encompassing PBS domainThe primary sequence:
tgttgtatga ctctggtaac tagagatccc tcagactact ctaggcagtg ta-aaaatctc tagcagtggc gcccgaacag ggactcgaaa gcgaaagtt---c cagagaagtt ctctcgacgc aggac
Isolates with identical sequences of region:
AF413959(#1347)
AF413987(#285)
The optimal secondary structure:
The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy
