CESSHIV-1 database

General information on HIV-1 isolate

# 666

Accession number	AM000053
Name	97CD.KCC2
Subtype	A4
Country	DRC
Sampling year	1997
Patient	KCC2

AM000053 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccacc ttag-cagagt gaaaaatctc tagcagtggc gcccgaacag ggactcgaaa gcgaaagtaa aagttccaga gaagttctct cgacgcagga c

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy