CESSHIV-1 database

General information on HIV-1 isolate

# 427

Accession number	AY445524
Name	pWCML249
Subtype	CD
Country	Kenya
Sampling year	1997
Patient	249

AY445524 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacctct ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

AY932743(#2211)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy