CESSHIV-1 database

General information on HIV-1 isolate

# 2183

Accession number	AY932713
Name	TZLM709
Subtype
Country	Tanzania
Submitted to NCBI	2005
Patient	709

AY932713 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtg--act ctggtaacta gagatccctc agacctctgt agtcagtgtg gaaaatctct agcagtggcg cccaacgtgg ggcttgaaag cgaaagtaga accagagaag ttctctcgac gcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy