CESSHIV-1 database

General information on HIV-1 isolate

# 1786

Accession number	EF370350
Name	05CMS5_2730
Subtype	B
Country	South Korea
Sampling year	2005
Patient	CMS

EF370350 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtagc tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggaccggaa agcgaaagag aaaccagagg agctctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy