CESSHIV-1 database

General information on HIV-1 isolate

# 1800

Accession number	EF370380
Name	06KBHn1_2720
Subtype	B
Country	South Korea
Sampling year	2006
Patient	KBH

EF370380 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt taagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta gaaccagagg agctctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy