CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1184
Accession number EU786671
Name ES P1261
SubtypeCRF02_AG
CountrySpain (Guinea-Bissau)
Sampling year 2006
PatientP1261

EU786671 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtatc tagagatccc tcagaccact ctagacttag tgaaaaatct ctagcagtgg cgcccgaaca gggaccggaa gttaataggg actcgaaagc gaaagtt---cca gagaagctct ctcgacgcag ggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012