CESSHIV-1 database

General information on HIV-1 isolate

# 3317

Accession number	GU647197
Name	plwj5_6
Subtype	B'
Country	China
Sampling year	1999
Patient	LWJ

GU647197 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacc-ttt tagtcagtgt ggaaaatctc tagcagtggc gcccgaacag ggacgcgaaa acgaaagtga gaccagagga gatctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy