CESSHIV-1 database

General information on HIV-1 isolate

# 2446

Accession number	L28878
Name	2C4
Subtype	B
Country	USA
Submitted to NCBI	1994
Patient	2

L28878 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctagtaac tagagatccc taagacc-ttt tagtcagtgt agaaaatctc tagcagtggc gcccgaacag ggacctgaaa gcgaaaggga aaccagagga gatctctcga cgcaagag

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy