CESSHIV-1 database

General information on HIV-1 isolate

# 2567

Accession number	U81462
Name	VE9NEF
Subtype	B
Country	Venezuela
Sampling year	1994
Patient	9

U81462 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa aacgaaagta gaaccggagg agctctctcg acgcaggac

Isolates with identical sequences of region:

D10112(#76) DQ295194(#571) U81455(#2560) U81458(#2563) U81480(#2585)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy