CESSHIV-1 database

General information on HIV-1 isolate

# 1308

Accession number	AF196742
Name	94RW13
Subtype	A
Country	Rwanda
Sampling year	1994

AF196742 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttctcgcc tgtactgggt ctctcttgtt agaccagata -gagcccggga gctctctggc tagctaggga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg tgtgcccgtc tgttgtgtga ctctggtaa

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy