CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3456
Accession number U37269
Name HIV1C98
SubtypeB
CountryAustralia
Submitted to NCBI 1995
PatientC98

U37269 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagcc-tcag atgctgcata taggcagctg ctttctgcct gtactgggtc tctctggtta gaccagatct gagcctggga gctctctggc taactaggga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg tgtgcccgtc tgttgtgtga ctctggtat

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

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Institute of Molecular Biology and Genetics 2008-2012