CESSHIV-1 database

General information on HIV-1 isolate

# 1292

Accession number	AF196722
Name	89ZR56
Subtype	D
Country	DRC
Sampling year	1989

AF196722 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ccagccctca gatgctgcat ataagcagct gctctttgcc tgtactgggt ctctctggtt agaccagatt tgagcctgag agctctctgg ctagctagag aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy