CESSHIV-1 database

General information on HIV-1 isolate

# 2709

Accession number	AB480045
Name	194AG29
Subtype	02D
Country	Ghana
Sampling year	2003

AB480045 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctagccct cagatgctgc atataagcag ccgctttctg cttgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaactgg ggaacccact gcttaagcct caataaagct tgccttgagt gccttaagta gtgt

Isolates with identical sequences of region:

AB480044(#2708) AB480046(#2710)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy