CESSHIV-1 database

General information on HIV-1 isolate

# 2348

Accession number	FJ614931
Name	99MHI12_4055
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	1999
Patient	MHI

FJ614931 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctaaccct cagacgctgc atataagcag ctgcttctcg cctgtactgg gtctctcttg ctagaccaga tttgagcctg ggagctctct gactagcaga ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

AF196761(#1324) FJ614926(#2343) FJ614927(#2344) FJ614940(#2357) FJ614951(#2370)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy