CESSHIV-1 database

General information on HIV-1 isolate

# 1981

Accession number	AF405198
Name	98ZM096F
Subtype	C
Country	Zambia
Sampling year	1998
Patient	096F

AF405198 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctaggtaga ccagatctga gcctgggagc tctctggcta tctggggaac ccactgctta agcctcaata aagcttgcct tgagtgctct aagtagtgt

Isolates with identical sequences of region:

AB191645(#1171) AF096640(#1921) AF096651(#1932) U51292(#2512)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy