CESSHIV-1 database

General information on HIV-1 isolate

# 1416

Accession number	AY839827
Name	04LHS6
Subtype	B
Country	South Korea
Sampling year	2004
Patient	LHS

AY839827 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct ttctgcttgt actgggtctc tctggttaga ccagatcaga gcctgggagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

EF370323(#1768) EF370325(#1769)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy