CESSHIV-1 database

General information on HIV-1 isolate

# 2253

Accession number	EF370285
Name	03YJN10a_2652s1
Subtype	B
Country	South Korea
Sampling year	2003
Patient	YJN

EF370285 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

EF370183(#1456) EF370197(#2231) EF370198(#1710) EF370206(#1711) EF370207(#3152) EF370233(#1722) EF370237(#3012) EF370242(#1719) EF370249(#1727) EF370305(#1753) EF370360(#1779) EF370369(#1796) EU047626(#1828) EU047627(#1829) EU047628(#1830) EU047629(#1831) EU047630(#1832) EU047633(#2942) EU047634(#1833) EU047645(#1843) EU047657(#2943)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy