CESSHIV-1 database

General information on HIV-1 isolate

# 1814

Accession number	EU047611
Name	06CSR5_3099
Subtype	B
Country	South Korea (USA)
Sampling year	2006
Patient	HP-21(CSR)

EU047611 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttctgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AF042106(#48) AF075719(#32) DQ287272(#2970) DQ287288(#3474) DQ287289(#3293) DQ287290(#3302) DQ287291(#3303) DQ287292(#3304) DQ287293(#3305) DQ287294(#3306) DQ287305(#3307) DQ287306(#3001) DQ287310(#2993) EF370172(#2226) EF370173(#2227) EF370174(#1708) EF370176(#1451) EF370177(#1452) EF370180(#1454) EF370181(#1455) EF370211(#2233) EF370294(#2256) EU047600(#2270) EU047603(#1623) EU047606(#1600) EU047608(#1811) EU047610(#1813) EU047612(#1815) EU047614(#1816) EU047615(#1817) EU047617(#1819) EU047619(#1821) EU047620(#1625) EU047621(#1823) EU047623(#1825) EU047624(#1826) EU047625(#1827) EU047693(#1888) M17449(#3) U37267(#3072) U80517(#2536)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy