CESSHIV-1 database

General information on HIV-1 isolate

# 3461

Accession number	EU807767
Name	ES9_2
Subtype	B
Country	USA
Submitted to NCBI	2008
Patient	ES9

EU807767 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttgcgcctgt actgggtctc tctagttgga ccagatctga gcctgggagc tctctggcta actggggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

EU807768(#3462)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy