CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2361
Accession number FJ614944
Name 00MHI10_5014
SubtypeCRF02_AG
CountrySouth Korea (Africa)
Sampling year 2000
PatientMHI

FJ614944 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

gccagctgct tctcgcttgt actgggtctc tcttgctaga ccagatttga gcctgggagc tctctgacta gcagaagaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012