CESSHIV-1 database

General information on HIV-1 isolate

# 3065

Accession number	GQ215498
Name	NII_PGI_IND_VTE26
Subtype	C
Country	India
Sampling year	2008
Patient	VTE26

GQ215498 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctaggtaga ccagatctga gcctgggagc tctctggcta tttagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttg aac-agtgt

Isolates with identical sequences of region:

GQ215491(#3058) GQ215492(#3059)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy