CESSHIV-1 database

General information on HIV-1 isolate

# 2460

Accession number	L28892
Name	4A1LTR
Subtype	B
Country	USA
Submitted to NCBI	1994
Patient	4

L28892 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct ttttgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

DQ295194(#571) EU047648(#1874) EU047649(#1845) L28883(#2451) L28884(#2452) L28891(#2459) L28894(#2462) L28898(#2466) L28903(#2471) L28904(#2472) L28911(#2479) L28912(#2480) L28917(#2485)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy