CESSHIV-1 database

General information on HIV-1 isolate

# 2552

Accession number	U80533
Name	TPVII
Subtype	B
Country	Venezuela
Sampling year	1994
Patient	TP7

U80533 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggctg actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AF102215(#3583) D10112(#76) DQ848482(#3648) L28880(#2448) U73096(#2523) U81455(#2560) U81458(#2563) U81460(#2565) U81475(#2580)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy