CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 269
Accession number AB097870
Name mS TD101
SubtypeB'
CountryMyanmar
Sampling year 1999
Patient101

AB097870 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagc gcgcgcagca agaggcgaga g-cggcggctg gtgagtacgc caaaaatctt gactagcgga ggctagaagg agaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy