CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 933
Accession number AB287367
Name p05JPDR7060B68
SubtypeB
CountryJapan
Sampling year 2005
PatientNH0020

AB287367 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gaggcgactg gtgagtacgc caaaaataaa atttttgact agcggaggct agaaggagag a

Isolates with identical sequences of region:

AB287366(#932)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy