CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3487
Accession number AB371845
Name JRC35
SubtypeB
CountryJapan
Submitted to NCBI 2007

AB371845 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagc gcgctcggca agaggcgagg ggcggcgaac ggtgagtacg ccaaat-tttt gactagcgga ggctagaagg agaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy