CESSHIV-1 database

General information on HIV-1 isolate

# 3491

Accession number	AB371854
Name	JRC44
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2007

AB371854 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaat-ttttga ctagcggagg ctagaaggag aga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy