CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2753
Accession number AB485662
Name HH8793
SubtypeG
CountryKenya
Sampling year 1993
PatientHH8793

AB485662 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacgcagcaa gaggcgagag -cggcgactgg tgagtacgcc aaactttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AB485663(#2754) AF061640(#26) AF061641(#27)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy