CESSHIV-1 database

General information on HIV-1 isolate

# 135

Accession number	AF110969
Name	C-96BW11.04
Subtype	C
Country	Botswana
Sampling year	1996
Patient	96BW11

AF110969 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcggctgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AY463229(#327) DQ351226(#625) EU293446(#1206) EU293449(#1209)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy