CESSHIV-1 database

General information on HIV-1 isolate

# 1399

Accession number	AF170548
Name	93TH902-1
Subtype	CRF01_AE
Country	Thailand
Sampling year	1993

AF170548 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgcggtg cacacagcaa gaggcgagac g-ggcgactgg tgagtacgcc aaa--ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

AF164485(#88) AF170545(#1396) AF170546(#1397) AF170547(#1398)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy