CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3507
Accession number AF193275
Name 97BL006
SubtypeA1
CountryBelarus
Sampling year 1997
PatientBL006

AF193275 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg crcacagcaa gaggcgagag -cggcgactgg tgagtacgcc taaagatttt tgactagcgg nggctagaag gagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy