CESSHIV-1 database

General information on HIV-1 isolate

# 1480

Accession number	AF254691
Name	NT21_3
Subtype	D
Country	Tanzania
Sampling year	1996
Patient	21

AF254691 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcagcgaacg gtgagtacgc tgaaa-ttttg actagcggag gctagaagga gag

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy