CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 221
Accession number AF423756
Name X397
SubtypeCRF14_BG
CountrySpain
Sampling year 1999
PatientX397

AF423756 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaggt gcacacagca agaggcgaga g-cggctactg gtgagtacgc cataaatttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

FJ670517(#3243)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy