CESSHIV-1 database

General information on HIV-1 isolate

# 181

Accession number	AF443083
Name	99BW3932.12
Subtype	C
Country	Botswana
Sampling year	1999
Patient	393212

AF443083 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggacccggct tgctgaagtg cactcggcaa gaggcgagag g-ggcggctgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy