CESSHIV-1 database

General information on HIV-1 isolate

# 194

Accession number	AF443096
Name	00BW1783.5
Subtype	C
Country	Botswana
Sampling year	2000
Patient	17835

AF443096 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aaaattttat ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

AF443088(#186) AF443099(#197) DQ351228(#627)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy