CESSHIV-1 database

General information on HIV-1 isolate

# 1589

Accession number	AM076887
Name	PG218_10
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG218

AM076887 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AF067154(#53) AF443110(#208) AF443112(#210) AY158533(#251) AY463224(#322) AY463227(#325) AY878059(#517) AY901965(#428) AY901971(#434) AY901977(#440) DQ011168(#458) DQ056409(#479) DQ056411(#481) DQ093596(#500) DQ164106(#543) DQ275649(#1227) DQ369981(#647) DQ396366(#688) DQ445634(#681) DQ445636(#683) DQ978981(#827) GQ999984(#3374)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy