CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3215
Accession number AM706401
Name SE1520
SubtypeA1
CountryDenmark
Sampling year 2003

AM706401 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgg-gtgc acacagcaag aggcgagag-c ggcgactggt gagtacgcca wt--ttttgact agcagaggct agaaggagag a

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy