CESSHIV-1 database

General information on HIV-1 isolate

# 3511

Accession number	AY062242
Name	RGAG4
Subtype	B
Country	USA
Sampling year	2001
Patient	Recipient

AY062242 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcgcagcaa gaggcgagtg gcggcgactg gtgagtacgc caaaattctt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY062239(#3508) AY062240(#3509) AY062241(#3510) AY062243(#3512) AY062244(#3513) AY062245(#3514)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy