CESSHIV-1 database

General information on HIV-1 isolate

# 300

Accession number	AY169805
Name	97US08692A
Subtype	Group O
Country	USA
Sampling year	1997
Patient	08692A

AY169805 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tagcggagtg cacctgctaa gaggcgag-----ag gaactcacag gg-gtgagtaa atttg-ctggc ggtggccaga cctaggggaa gggcgaagtc tctaggggag gaa

Isolates with identical sequences of region:

AB485668(#2759) AB485669(#2760) AY169807(#301)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy