CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1125
Accession number AY169808
Name 98CMU5337
SubtypeGroup O
CountryCameroon
Sampling year 1998
Patient5337

AY169808 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tagcggagtg cacccgctaa gaggcgag-----ag gaactcacag agggtgagta attttg-ctgg cggtggccag acctagggga aggacgaagt ctctaggggr ggga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012