CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 308
Accession number AY169815
Name 99CMU4122
SubtypeGroup O
CountryCameroon
Sampling year 1999
Patient4122

AY169815 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tagcggagtg cacctgctaa gaggcgag-----ag gactcacaga agggtgagta aatttg-ctgg cggtggccag acctagggga agggcgaagt ctctagggga ggaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012