CESSHIV-1 database

General information on HIV-1 isolate

# 247

Accession number	AY173954
Name	US3
Subtype	B
Country	USA
Sampling year	1990
Patient	US3

AY173954 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

DQ085869(#573) DQ085870(#574) DQ487190(#725)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy